Detailed information of SNP:
|
SNP ID:
sf0409624953(Gbrowse)
Chromosome: chr04 Position: 9624953 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 92.22% | 7.78% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 430 | 76.28% | 23.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 271 | 66.79% | 33.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409624953 | A->G | INTERGENIC | None |