Detailed information of SNP:
|
SNP ID:
sf0409644797(Gbrowse)
Chromosome: chr04 Position: 9644797 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 83.86% | 16.14% |
| All Indica | 712 | 70.37% | 29.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 55.45% | 44.55% |
| Indica II | 191 | 85.34% | 14.66% |
| Indica Intermediate | 200 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409644797 | T->G | INTERGENIC | None |