Detailed information of SNP:



SNP ID: sf0409731636(Gbrowse)

Chromosome: chr04

Position: 9731636
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1382 98.34% 1.66%
All Indica797 100.00% 0.00%
All Japonica467 96.15% 3.85%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II211 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica333 99.10% 0.90%
Tropical Japonica70 81.43% 18.57%
Japonica Intermediate64 96.88% 3.12%
Group VI/Aromatic11 90.91% 9.09%
Intermediate40 90.00% 10.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0409731636 C->T INTERGENIC None