Detailed information of SNP:
|
SNP ID:
sf0409731636(Gbrowse)
Chromosome: chr04 Position: 9731636 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 98.34% | 1.66% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 467 | 96.15% | 3.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 70 | 81.43% | 18.57% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409731636 | C->T | INTERGENIC | None |