Detailed information of SNP:
|
SNP ID:
sf0409735886(Gbrowse)
Chromosome: chr04 Position: 9735886 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.16% | 36.84% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409735886 | T->A | LOC_Os04g17780(LOC_Os04g17780.1) | INTRON |