Detailed information of SNP:
|
SNP ID:
sf0409753543(Gbrowse)
Chromosome: chr04 Position: 9753543 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 80.64% | 19.36% |
| All Indica | 760 | 68.16% | 31.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 70.97% | 29.03% |
| Indica I | 357 | 77.87% | 22.13% |
| Indica II | 200 | 57.50% | 42.50% |
| Indica Intermediate | 203 | 61.58% | 38.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409753543 | T->C | INTERGENIC | None |