Detailed information of SNP:
|
SNP ID:
sf0409758956(Gbrowse)
Chromosome: chr04 Position: 9758956 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 71.44% | 28.56% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 484 | 20.04% | 79.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 83 | 80.72% | 19.28% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409758956 | A->G | INTERGENIC | None |