Detailed information of SNP:
|
SNP ID:
sf0409764569(Gbrowse)
Chromosome: chr04 Position: 9764569 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 69.57% | 30.43% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 481 | 16.63% | 83.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 80 | 71.25% | 28.75% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409764569 | C->T | INTERGENIC | None |