Detailed information of SNP:
|
SNP ID:
sf0409769317(Gbrowse)
Chromosome: chr04 Position: 9769317 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 63.39% | 36.61% |
| All Indica | 731 | 89.06% | 10.94% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 60 | 76.67% | 23.33% |
| Indica I | 324 | 85.80% | 14.20% |
| Indica II | 203 | 88.67% | 11.33% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409769317 | T->C | INTERGENIC | None |