Detailed information of SNP:
|
SNP ID:
sf0409795529(Gbrowse)
Chromosome: chr04 Position: 9795529 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 68.09% | 31.91% |
| All Indica | 773 | 95.21% | 4.79% |
| All Japonica | 496 | 22.78% | 77.22% |
| Aus | 59 | 89.83% | 10.17% |
| Indica I | 357 | 94.40% | 5.60% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409795529 | T->G | INTERGENIC | None |