Detailed information of SNP:
|
SNP ID:
sf0409795987(Gbrowse)
Chromosome: chr04 Position: 9795987 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 95.66% | 4.34% |
| All Indica | 741 | 92.85% | 7.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 341 | 90.62% | 9.38% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 201 | 93.53% | 6.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409795987 | A->T | INTERGENIC | None |