Detailed information of SNP:
|
SNP ID:
sf0409833181(Gbrowse)
Chromosome: chr04 Position: 9833181 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 96.71% | 3.29% |
| All Indica | 757 | 95.51% | 4.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 195 | 90.77% | 9.23% |
| Indica Intermediate | 195 | 94.87% | 5.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409833181 | G->A | INTERGENIC | None |