Detailed information of SNP:
|
SNP ID:
sf0409838294(Gbrowse)
Chromosome: chr04 Position: 9838294 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 57.48% | 42.52% |
| All Indica | 755 | 35.23% | 64.77% |
| All Japonica | 454 | 97.36% | 2.64% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 348 | 49.71% | 50.29% |
| Indica II | 201 | 22.39% | 77.61% |
| Indica Intermediate | 206 | 23.30% | 76.70% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 61 | 88.52% | 11.48% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409838294 | A->G | LOC_Os04g17900(LOC_Os04g17900.1) | INTRON |