Detailed information of SNP:
|
SNP ID:
sf0409849460(Gbrowse)
Chromosome: chr04 Position: 9849460 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 97.37% | 2.63% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 92.83% | 7.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 68.60% | 31.40% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409849460 | T->A | INTERGENIC | None |