Detailed information of SNP:
|
SNP ID:
sf0409851182(Gbrowse)
Chromosome: chr04 Position: 9851182 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 60.13% | 39.87% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409851182 | G->A | INTERGENIC | None |