Detailed information of SNP:
|
SNP ID:
sf0409852031(Gbrowse)
Chromosome: chr04 Position: 9852031 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409852031 | C->A | INTERGENIC | None |