Detailed information of SNP:
|
SNP ID:
sf0409852570(Gbrowse)
Chromosome: chr04 Position: 9852570 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.31% | 37.69% |
| All Indica | 796 | 96.48% | 3.52% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409852570 | G->A | INTERGENIC | None |