Detailed information of SNP:
|
SNP ID:
sf0409852628(Gbrowse)
Chromosome: chr04 Position: 9852628 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 92.54% | 7.46% |
| All Indica | 771 | 88.59% | 11.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 84.75% | 15.25% |
| Indica I | 365 | 90.14% | 9.86% |
| Indica II | 200 | 86.50% | 13.50% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409852628 | A->G | INTERGENIC | None |