Detailed information of SNP:
|
SNP ID:
sf0409852954(Gbrowse)
Chromosome: chr04 Position: 9852954 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 62.52% | 37.48% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409852954 | C->T | INTERGENIC | None |