Detailed information of SNP:
|
SNP ID:
sf0409858208(Gbrowse)
Chromosome: chr04 Position: 9858208 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 79.05% | 20.95% |
| All Indica | 760 | 68.55% | 31.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 36.07% | 63.93% |
| Indica I | 356 | 75.00% | 25.00% |
| Indica II | 200 | 58.00% | 42.00% |
| Indica Intermediate | 204 | 67.65% | 32.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409858208 | T->A | INTERGENIC | None |