Detailed information of SNP:
|
SNP ID:
sf0409905332(Gbrowse)
Chromosome: chr04 Position: 9905332 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1284 | 91.43% | 8.57% |
| All Indica | 666 | 83.63% | 16.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 275 | 61.82% | 38.18% |
| Indica II | 195 | 99.49% | 0.51% |
| Indica Intermediate | 196 | 98.47% | 1.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409905332 | A->G | LOC_Os04g18010(LOC_Os04g18010.2) | INTRON |
| sf0409905332 | A->G | LOC_Os04g18010(LOC_Os04g18010.1) | INTRON |
| sf0409905332 | A->G | LOC_Os04g18010(LOC_Os04g18010.3) | INTRON |