Detailed information of SNP:
|
SNP ID:
sf0409915392(Gbrowse)
Chromosome: chr04 Position: 9915392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1300 | 93.69% | 6.31% |
| All Indica | 680 | 87.94% | 12.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 282 | 71.99% | 28.01% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 98.46% | 1.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0409915392 | G->A | INTERGENIC | None |