Detailed information of SNP:
|
SNP ID:
sf0410028507(Gbrowse)
Chromosome: chr04 Position: 10028507 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 96.74% | 3.26% |
| All Indica | 740 | 95.41% | 4.59% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 357 | 95.52% | 4.48% |
| Indica II | 194 | 95.88% | 4.12% |
| Indica Intermediate | 189 | 94.71% | 5.29% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410028507 | T->C | LOC_Os04g18160(LOC_Os04g18160.1) | INTRON |