Detailed information of SNP:
|
SNP ID:
sf0410029548(Gbrowse)
Chromosome: chr04 Position: 10029548 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1279 | 61.06% | 38.94% |
| All Indica | 670 | 31.94% | 68.06% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 58 | 55.17% | 44.83% |
| Indica I | 311 | 31.83% | 68.17% |
| Indica II | 188 | 32.98% | 67.02% |
| Indica Intermediate | 171 | 30.99% | 69.01% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410029548 | A->G | LOC_Os04g18160(LOC_Os04g18160.1) | INTRON |