Detailed information of SNP:
|
SNP ID:
sf0410032744(Gbrowse)
Chromosome: chr04 Position: 10032744 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.82% | 30.18% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410032744 | A->G | INTERGENIC | None |