Detailed information of SNP:
|
SNP ID:
sf0410050421(Gbrowse)
Chromosome: chr04 Position: 10050421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.42% | 8.58% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 78.30% | 21.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410050421 | G->A | INTERGENIC | None |