Detailed information of SNP:
|
SNP ID:
sf0410067579(Gbrowse)
Chromosome: chr04 Position: 10067579 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 92.04% | 7.96% |
| All Indica | 726 | 85.54% | 14.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 74.23% | 25.77% |
| Indica II | 197 | 95.43% | 4.57% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410067579 | G->A | INTERGENIC | None |