Detailed information of SNP:
|
SNP ID:
sf0410070926(Gbrowse)
Chromosome: chr04 Position: 10070926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1247 | 97.03% | 2.97% |
| All Indica | 629 | 94.28% | 5.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 265 | 93.58% | 6.42% |
| Indica II | 178 | 97.19% | 2.81% |
| Indica Intermediate | 186 | 92.47% | 7.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410070926 | C->T | INTERGENIC | None |