Detailed information of SNP:
|
SNP ID:
sf0410099814(Gbrowse)
Chromosome: chr04 Position: 10099814 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 96.40% | 3.60% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 483 | 97.52% | 2.48% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 85.37% | 14.63% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410099814 | C->T | LOC_Os04g18310(LOC_Os04g18310.1) | Non-Synonymous SNP |