Detailed information of SNP:
|
SNP ID:
sf0410100103(Gbrowse)
Chromosome: chr04 Position: 10100103 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.78% | 31.22% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 17.91% | 82.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410100103 | G->A | LOC_Os04g18310(LOC_Os04g18310.1) | Non-Synonymous SNP |