Detailed information of SNP:
|
SNP ID:
sf0410115341(Gbrowse)
Chromosome: chr04 Position: 10115341 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410115341 | G->A | LOC_Os04g18340(LOC_Os04g18340.1) | INTRON |