Detailed information of SNP:
|
SNP ID:
sf0410117162(Gbrowse)
Chromosome: chr04 Position: 10117162 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 75.39% | 24.61% |
| All Indica | 738 | 57.59% | 42.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 342 | 54.68% | 45.32% |
| Indica II | 202 | 62.87% | 37.13% |
| Indica Intermediate | 194 | 57.22% | 42.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410117162 | G->A | LOC_Os04g18340(LOC_Os04g18340.1) | SNPs that introduce stop codons |