Detailed information of SNP:
|
SNP ID:
sf0410119561(Gbrowse)
Chromosome: chr04 Position: 10119561 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1316 | 95.06% | 4.94% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 398 | 84.17% | 15.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 243 | 74.90% | 25.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410119561 | A->G | LOC_Os04g18340(LOC_Os04g18340.1) | INTRON |