Detailed information of SNP:
|
SNP ID:
sf0410171006(Gbrowse)
Chromosome: chr04 Position: 10171006 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1269 | 72.89% | 27.11% |
| All Indica | 669 | 55.46% | 44.54% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 51 | 43.14% | 56.86% |
| Indica I | 313 | 61.98% | 38.02% |
| Indica II | 176 | 46.59% | 53.41% |
| Indica Intermediate | 180 | 52.78% | 47.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410171006 | C->T | INTERGENIC | None |