Detailed information of SNP:
|
SNP ID:
sf0410178628(Gbrowse)
Chromosome: chr04 Position: 10178628 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 98.05% | 1.95% |
| All Indica | 770 | 97.27% | 2.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 363 | 97.80% | 2.20% |
| Indica II | 204 | 97.06% | 2.94% |
| Indica Intermediate | 203 | 96.55% | 3.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410178628 | G->A | INTERGENIC | None |