Detailed information of SNP:
|
SNP ID:
sf0410204932(Gbrowse)
Chromosome: chr04 Position: 10204932 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.02% | 11.98% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410204932 | A->G | LOC_Os04g18480(LOC_Os04g18480.1) | Non-Synonymous SNP |