Detailed information of SNP:
|
SNP ID:
sf0410218061(Gbrowse)
Chromosome: chr04 Position: 10218061 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 72.01% | 27.99% |
| All Indica | 723 | 64.73% | 35.27% |
| All Japonica | 482 | 82.37% | 17.63% |
| Aus | 57 | 75.44% | 24.56% |
| Indica I | 343 | 71.72% | 28.28% |
| Indica II | 193 | 60.10% | 39.90% |
| Indica Intermediate | 187 | 56.68% | 43.32% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 85 | 18.82% | 81.18% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410218061 | T->C | LOC_Os04g18500(LOC_Os04g18500.1) | Synonymous |