Detailed information of SNP:
|
SNP ID:
sf0410229967(Gbrowse)
Chromosome: chr04 Position: 10229967 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 95.40% | 4.60% |
| All Indica | 773 | 93.27% | 6.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 368 | 95.38% | 4.62% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 200 | 89.50% | 10.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410229967 | C->T | INTERGENIC | None |