Detailed information of SNP:
|
SNP ID:
sf0410237460(Gbrowse)
Chromosome: chr04 Position: 10237460 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 58.45% | 41.55% |
| All Indica | 792 | 92.93% | 7.07% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410237460 | A->C | INTERGENIC | None |