Detailed information of SNP:
|
SNP ID:
sf0410241644(Gbrowse)
Chromosome: chr04 Position: 10241644 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.23% | 11.77% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410241644 | G->C | LOC_Os04g18559(LOC_Os04g18559.1) | Non-Synonymous SNP |