Detailed information of SNP:
|
SNP ID:
sf0410253727(Gbrowse)
Chromosome: chr04 Position: 10253727 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 64.56% | 35.44% |
| All Indica | 769 | 88.69% | 11.31% |
| All Japonica | 491 | 24.03% | 75.97% |
| Aus | 58 | 82.76% | 17.24% |
| Indica I | 366 | 88.52% | 11.48% |
| Indica II | 198 | 87.37% | 12.63% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 329 | 5.17% | 94.83% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410253727 | T->C | LOC_Os04g18580(LOC_Os04g18580.1) | Non-Synonymous SNP |