Detailed information of SNP:
|
SNP ID:
sf0410281754(Gbrowse)
Chromosome: chr04 Position: 10281754 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 95.67% | 4.33% |
| All Indica | 790 | 94.43% | 5.57% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410281754 | A->G | INTERGENIC | None |