Detailed information of SNP:
|
SNP ID:
sf0410286692(Gbrowse)
Chromosome: chr04 Position: 10286692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1254 | 91.31% | 8.69% |
| All Indica | 652 | 84.82% | 15.18% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 53 | 92.45% | 7.55% |
| Indica I | 326 | 86.20% | 13.80% |
| Indica II | 155 | 86.45% | 13.55% |
| Indica Intermediate | 171 | 80.70% | 19.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410286692 | G->A | INTERGENIC | None |