Detailed information of SNP:
|
SNP ID:
sf0410296974(Gbrowse)
Chromosome: chr04 Position: 10296974 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 68.91% | 31.09% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 492 | 13.41% | 86.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 90 | 60.00% | 40.00% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410296974 | C->T | LOC_Os04g18640(LOC_Os04g18640.1) | Non-Synonymous SNP |