Detailed information of SNP:
|
SNP ID:
sf0410377140(Gbrowse)
Chromosome: chr04 Position: 10377140 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 96.87% | 3.13% |
| All Indica | 788 | 95.56% | 4.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 204 | 98.04% | 1.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410377140 | A->G | INTERGENIC | None |