Detailed information of SNP:
|
SNP ID:
sf0410381314(Gbrowse)
Chromosome: chr04 Position: 10381314 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 65.69% | 34.31% |
| All Indica | 786 | 44.91% | 55.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 373 | 23.06% | 76.94% |
| Indica II | 207 | 64.73% | 35.27% |
| Indica Intermediate | 206 | 64.56% | 35.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410381314 | T->C | LOC_Os04g18730(LOC_Os04g18730.1) | INTRON |