Detailed information of SNP:



SNP ID: sf0410381329(Gbrowse)

Chromosome: chr04

Position: 10381329 		Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1403 64.50% 35.50%
All Indica785 43.18% 56.82%
All Japonica497 99.80% 0.20%
Aus66 42.42% 57.58%
Indica I370 21.89% 78.11%
Indica II208 62.02% 37.98%
Indica Intermediate207 62.32% 37.68%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 64.29% 35.71%
Intermediate41 80.49% 19.51%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0410381329 G->A LOC_Os04g18730(LOC_Os04g18730.1) INTRON