Detailed information of SNP:
|
SNP ID:
sf0410388432(Gbrowse)
Chromosome: chr04 Position: 10388432 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.05% | 30.95% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410388432 | A->G | INTERGENIC | None |