Detailed information of SNP:
|
SNP ID:
sf0410388724(Gbrowse)
Chromosome: chr04 Position: 10388724 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.72% | 31.28% |
| All Indica | 790 | 93.92% | 6.08% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410388724 | T->C | INTERGENIC | None |