Detailed information of SNP:
|
SNP ID:
sf0410397160(Gbrowse)
Chromosome: chr04 Position: 10397160 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 83.11% | 16.89% |
| All Indica | 690 | 76.38% | 23.62% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 58 | 55.17% | 44.83% |
| Indica I | 314 | 69.75% | 30.25% |
| Indica II | 187 | 83.96% | 16.04% |
| Indica Intermediate | 189 | 79.89% | 20.11% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410397160 | T->A | LOC_Os04g18750(LOC_Os04g18750.1) | Non-Synonymous SNP |