Detailed information of SNP:
|
SNP ID:
sf0410414126(Gbrowse)
Chromosome: chr04 Position: 10414126 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 89.77% | 10.23% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 489 | 78.12% | 21.88% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 95.50% | 4.50% |
| Tropical Japonica | 90 | 8.89% | 91.11% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0410414126 | T->G | INTERGENIC | None |