Detailed information of SNP:
SNP ID:
sf0410414126(Gbrowse)
Chromosome: chr04 Position: 10414126 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1407 | 89.77% | 10.23% |
All Indica | 797 | 97.37% | 2.63% |
All Japonica | 489 | 78.12% | 21.88% |
Aus | 67 | 94.03% | 5.97% |
Indica I | 374 | 99.20% | 0.80% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 210 | 99.05% | 0.95% |
Temperate Japonica | 333 | 95.50% | 4.50% |
Tropical Japonica | 90 | 8.89% | 91.11% |
Japonica Intermediate | 66 | 84.85% | 15.15% |
Group VI/Aromatic | 13 | 69.23% | 30.77% |
Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0410414126 | T->G | INTERGENIC | None |